Access to nitrogen-nitrogen bond-containing heterocycles through substrate promiscuity of piperazate synthases

17 February 2025, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

The nitrogen-nitrogen (N-N) bond motif comprises an important class of compounds for drug discovery. Synthetic methods are primarily based on the modification of N-N or N=N precursors, whereas selective methods for direct N-N coupling offer advantages in terms of atom economy and sustainability. In this context, enzymes such as piperazate synthases (PZSs), which naturally catalyze the N-N cyclization of L-N5-hydroxyornithine to the cyclic hydrazine L-piperazate, may allow an expansion of the current narrow range of chemical approaches for N-N coupling. In this study, we demonstrate that PZSs are able to catalyze the conversion of various N-hydroxylated diamines, which are different from the natural substrate. The N-hydroxylated diamines were obtained in situ using N-hydroxylating monooxygenases (NMOs), allowing subsequent cyclization by PZS, ultimately forming the N-N bond to yield various N-N bond-containing heterocycles. Using bioinformatic tools, we identified novel NMO and PZS homologs that exhibit distinct activity and stereoselectivity profiles. The screened panel yielded 17 hydroxylated diamines and new promiscuous NMOs, thereby expanding the substrate range of NMOs resulting in the formation of previously poorly accessible N-hydroxylated products as substrates for PZS. The subsequently investigated PZSs led to a series of 5- and 6-membered N-N bond-containing heterocycles, and the most promiscuous catalysts were used to scale up and optimize the synthesis, yielding the desired N-N bond-containing heterocycles with up to 45% isolated yield. Overall, our data provides essential insights into the substrate promiscuity and activity of NMOs and PZSs, further enhancing the potential of these biocatalysts for an expanded range of N-N coupling reactions.

Keywords

Biocatalysis
N-Heterocycles
Diamines
N-hydroxylating Monooxygenases
Piperazate Synthases
Nitrogen-Nitrogen Bond-Forming Enzymes

Supplementary materials

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Supporting Information
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All data are available in the main text or the supplementary information file containing additional tables and figures demonstrating enzyme activity, NMR spectra, and HPLC data. All data are available from the corresponding author upon request.
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