Synthesis of Selectively 13C/2H/15N-Labelled Arginine to Probe Protein Conformation and Interaction by NMR Spectroscopy

05 February 2025, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

The charged arginine side chain is unique in determining many innate properties of proteins, contributing to stability and interaction surfaces, and directing allosteric regulation and enzymatic catalysis. NMR experiments can be used to reveal these processes at the molecular level, but it often requires selective insertion of carbon-13, nitrogen-15 and deuterium at defined atomic positions. We introduce a method to endow arginine residues with defined isotope patterns, combining synthetic organic chemistry and cell-based protein overexpression. The resulting proteins feature NMR active spin systems with optimized relaxation pathways leading to simplified NMR spectra with a sensitive response to changes in the chemical environment of the nuclei observed.

Keywords

NMR spectroscopy
Structural Biology
Proteins
Protein interaction

Supplementary materials

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Supporting Information
Description
1 Optimization to yield 13Cδ/2Hβ,γ/15Nε (S)-2-(tert-butoxycarbonyl)amino-4-cyanobutanoic acid (9) 2 Conditions for the cell free expression of SH3 3 NMR spectra
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