Accelerating Molecular Dynamics Simulations Using Socket-Based Inter-Process Communication

03 October 2024, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Molecular Dynamics (MD) simulations are essential for studying the time evolution of molecular systems. Still, their efficiency is often bottlenecked by file-based Inter-Process Communication (IPC) between MD and Electronic Structure (ES) programs. We present a socket-based IPC implementation that dramatically accelerates MD simulations, reducing computational time by over tenfold compared to traditional file-based methods. Our approach, applied to nonadiabatic molecular dynamics with the Newton-X program, eliminates disk read/write overhead, allowing for faster simulations over longer timescales. This method opens the door to more efficient high-throughput simulations, providing new opportunities for exploring complex molecular processes in real-time.

Keywords

Molecular Dynamics
Inter-Process Communication (IPC)
Socket-based Communication
Nonadiabatic Dynamics
Machine Learning Potentials

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