Abstract
Atomic Force Microscopy (AFM) is a powerful but demanding imaging technique used also to study the interaction strength of single biomolecules by force spectroscopy. Here we provide a viAFM program designed to facilitate multi- directional steered molecular dynamics simulations and analysis of forces required to disrupt protein complexes thus mimicking AFM force spectroscopy experiments. Our viAFM tool allows for rapid assessment of protein-protein interaction strength, anisotropy, and the impact of ligands or mutations on complex stability, enabling efficient testing of drug candidates.
Supplementary materials
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viAFM supplementary information
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viAFM supplementary information
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GitHub repository
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The viAFM software is made available under the Apache 2.0 license, ensuring accessibility and adherence
to non-commercial terms of use. The program, accompanied by comprehensive documentation, is hosted on
GitHub at the following repository: https://github.com/kszewc/viAFM.
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