Polarizable AMOEBA force field predicts thin and dense hydration layer around monosaccharides for accurate simulations of carbohydrates in solution

02 September 2024, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Polarizable force fields crucially enhance the modeling of macromolecules in polar media. Here, we present new parameters to model six common monosaccharides with the polarizable AMOEBA force field. These parameters yield a thinner, but denser, hydration layer than that previously reported. This denser hydration layer results in eliminating non- physical aggregation of glucose in water – an issue that has plagued molecular dynamics simulations of carbohydrates for decades.

Supplementary materials

Title
Description
Actions
Title
Supplementary Information
Description
Average bond lengths, angle and torsion, RDFs for alpha anomers, mean-square displacement as a function of time and ring dihedral.
Actions

Comments

Comments are not moderated before they are posted, but they can be removed by the site moderators if they are found to be in contravention of our Commenting Policy [opens in a new tab] - please read this policy before you post. Comments should be used for scholarly discussion of the content in question. You can find more information about how to use the commenting feature here [opens in a new tab] .
This site is protected by reCAPTCHA and the Google Privacy Policy [opens in a new tab] and Terms of Service [opens in a new tab] apply.