Abstract
Understanding historical chemical usage is crucial for assessing current and past impacts on human health and the environment and informing future regulatory decisions. However, past monitoring data is often limited in scope and number of chemicals, while suitable sample types are not always available for remeasurement. Data-driven cheminformatics methods on patent and literature data offer several opportunities to fill this gap. The chemical stripes were developed as an interactive, open source tool for visualising patent and literature trends over time, inspired by the global warming and biodiversity stripes. This paper details the underlying code and datasets behind the visualisation, with a major focus on the patent data sourced from PubChem, including patent origins, uses, and countries. Overall trends and specific examples are investigated in greater detail to explore both the promise and caveats that such data offers in assessing the trends and patterns of chemical patents over time and across different geographic regions. Despite a number of potential artefacts associated with patent data extraction, the integration of cheminformatics, statistical analysis, and data visualisation tools can help generate valuable insights that can both illuminate the chemical past and potentially serve towards an early warning system for the future.
Supplementary materials
Title
Supporting Information for Revealing Chemical Trends: Insights from Data-Driven Visualisation and Patent Analysis in Exposomics Research
Description
The supporting information file contains brief text describing the repository, figures showing patent count by region (Figure S1), regional patent counts for agrochemicals, biocides, bisphenols, PCBs, PFAS (Figures S2-6), connected and disconnected networks (Figures S7-8), centrality results for China, EU and US for PFAS and Agrochemicals (Figures S9-10), screenshots of verifying patent information in PubChem (Figures S11-12). Code is available online at https://gitlab.com/uniluxembourg/lcsb/eci/chemicalstripes (Chemical Striptes) and https://gitlab.com/uniluxembourg/lcsb/eci/ULPatentTrends (ULPatentTrends notebooks).
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Supplementary weblinks
Title
Chemical Stripes R package
Description
An R package for generating chemical stripes from patent or literature data extracted from PubChem
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ULPatentTrends - Jupyter Notebooks
Description
ULPatentTrends contains several Jupyter notebooks to explore the patent data used in the Chemical Stripes package, authored by Flavio de Jesus Matias in collaboration with Dagny Aurich & Emma Schymanski from ECI and Jun Pang, FSTM.
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