Computational characterization of the DAD photoisomerization: Functionalization, protonation and solvation effects.

02 August 2024, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Photoswitches are becoming increasingly popular in pharmacology due to the possibility of modifying their activity with light. Hence, it is crucial to understand the photophysics of these compounds to identify promising light-activated drugs. We focused our study on DAD, an azobenzene derivative that, according to a previous experimental investigation, can restore visual function in blind mice due to trans-cis photoisomerization upon light absorption. With the present computational study, we aim to characterize the absorption spectrum of DAD, and to understand its photoisomerization mechanism by means of conformational search analysis, quantum mechanical (QM) and hybrid QM/continuum calculations, and classical molecular dynamics simulations. Moreover, we explored the effect of the derivation (DAD vs azobenzene), the protonation (DAD vs DADH22+, the two possible protonation states) and the solvation effects (vacuum vs water) on the photoisomerization. Similarly to azobenzene, we showed that the photoisomerization of both protonation states of DAD begin with the population of the bright S2 state. Then, it crosses to the S1 surface and relaxes along the rotation of the azo dihedral to a S1/S0 crossing point. The latter is close to a transition state that connects the trans and cis geometries on the ground state. Finally, our results suggested that amino derivation, non-protonation and water solvation could improve the quantum yield of the photoisomerization.

Keywords

Photoisomerization
Azobenzene Derivatives
Time-Dependent Density Functional Theory
Molecular Dynamics

Supplementary materials

Title
Description
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Title
Supplementary Material
Description
Absorption spectra and photoisomerization pathways at different levels of theory
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