HSADab: A Comprehensive Database for Human Serum Albumin

20 May 2024, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Human Serum Albumin (HSA), the most prevalent protein in human body fluids, is integral to the transportation, absorption, metabolism, distribution, and excretion of drugs. Its influence on a drug's therapeutic efficacy is substantial. Despite the importance of HSA as a drug target, the available data on its interactions with external agents (e.g., drug-like molecules and antibodies) are rather limited, which poses challenges for both molecular modelling investigations and the development of empirical scoring functions or machine learning predictors on this target. Moreover, the reported entries in existing databases often contain major inconsistencies due to varied experiments and conditions, which incurs worries about the data quality. To address these issues, we established a pioneering database through extensively reviewing more than 30000 scientific publications published between 1987 and 2023, encompassing over 5000 affinity data at multiple temperatures and more than 130 crystal structures that involve both the ligand-bound and apo forms. The current HSADab resource (www.hsadab.cn) serves as a reliable foundation for protocol validations of molecular simulations (e.g., traditional virtual screening workflow using docking, end-point and alchemical free energy techniques) as well as the data source for the implementation of machine learning predictors.

Keywords

Database
Webserver
Binding Affinity
Crystal Structure
Human Serum Albumin
Binding Affinity
HSA
Protein-ligand Interaction
Hydrogen Bond
Salt Bridge
HSADab
Protein-protein Interaction
Fluorescence Resonance Energy Transfer
Isothermal Titration Calorimetry
UV-Vis spectroscopy
Kinetics
k_on
k_off
fingerprints
SMILES
Shannon Diversity
t-SNE
Binding Pocket
Binding Constant
stoichiometry
Halogen Bond
rate constant
surface area
Molecular Docking

Supplementary materials

Title
Description
Actions
Title
supporting information
Description
supporting information
Actions

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