Computational Large-Scale Screening of Bioorthogonal 1,2,4,5-Tetrazine/trans-Cyclooctene Cycloadditions

25 April 2024, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Bioorthogonal reactions between 1,2,4,5-tetrazines and trans-cyclooctenes have emerged as valuable chemical tools in the fields of chemical biology and material science, and they hold significant potential for medical applications. The most critical attribute of such reactions is their rate. Experimental investigations into the reactivity of 1,2,4,5-tetrazines are time-consuming and costly. In contrast, computational screenings can rapidly identify reactants that exhibit desired reactivity. In this study, we introduce a tool for automated computational screening that assesses the reactivity of a large pool of tetrazines. This effort has produced an initial dataset of 1,288 reaction barriers, which can be utilized to develop machine learning models.

Keywords

Bioorthogonal
Click Chemistry
Computational Screening

Supplementary materials

Title
Description
Actions
Title
Results and Files needed to reproduce
Description
run.py, XYZ_gen.py, SMILES.txt, SMILES_fragments.txt, substituent XYZ coordinates, and results of the screening (CSV file).
Actions

Comments

Comments are not moderated before they are posted, but they can be removed by the site moderators if they are found to be in contravention of our Commenting Policy [opens in a new tab] - please read this policy before you post. Comments should be used for scholarly discussion of the content in question. You can find more information about how to use the commenting feature here [opens in a new tab] .
This site is protected by reCAPTCHA and the Google Privacy Policy [opens in a new tab] and Terms of Service [opens in a new tab] apply.