Simulation-guided engineering enables a functional switch in selinadiene synthase towards hydroxylation

05 April 2024, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Engineering sesquiterpene synthases to form predefined alternative products is a major challenge due to their diversity in cyclisation mechanisms and our limited understanding of how amino acid changes affect the steering of these mechanisms. Here, we use a combination of atomistic simulation and site-directed mutagenesis to engineer a selina-4(15),7(11)-diene synthase (SdS) such that its final reactive carbocation is quenched by a trapped active site water, resulting in the formation of a complex hydroxylated sesquiterpene (selina-4-ol). Initially, the SdS G305E variant produced 20% selina-4-ol. As suggested by modelling of the enzyme-carbocation complex, selina-4-ol production could be further improved by varying the pH, resulting in selina-4-ol becoming the major product (48%) at pH 6.0. We incorporated the SdS G305E variant along with genes from the mevalonate pathway into bacterial BL21(DE3) cells and demonstrated production of selina-4-ol at a scale of 10 mg/L in batch fermentation. These results highlight opportunities for simulation-guided engineering of terpene synthases to produce predefined complex hydroxylated sesquiterpenes.

Keywords

terpenoids
enzyme engineering
selina-4-ol
sesquiterpene
MD simulation

Supplementary materials

Title
Description
Actions
Title
Supporting Information
Description
Details on cloning, mutagenesis, expression and purification of protein variants; MD and QM/MM simulation methods and results (Figures S1-2); GC-MS chromatograms (Figures S3-34), GC chromatograms (Figures S35-39), mass fragmentation patterns (Figures S40-48), kinetics and product analysis (including NMR spectra; Figures S49-68); are described in the Supporting Information document (PDF)
Actions

Comments

Comments are not moderated before they are posted, but they can be removed by the site moderators if they are found to be in contravention of our Commenting Policy [opens in a new tab] - please read this policy before you post. Comments should be used for scholarly discussion of the content in question. You can find more information about how to use the commenting feature here [opens in a new tab] .
This site is protected by reCAPTCHA and the Google Privacy Policy [opens in a new tab] and Terms of Service [opens in a new tab] apply.