1,6-Thiol Addition of Trifunctional N-Alkylpyridinium for Site-selective Dual Functionalization of Proteins

22 April 2024, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

We report N-alkylpyridinium reagents for site-selective dual modification of proteins via a regioselective 1,6-thiol addition reaction. The N-alkylpyridinium derivatives can be syn-thesized in two reaction steps and demonstrate high labelling efficiency and chemose-lectivity towards cysteine residues. This reaction is combined with strain-promoted azide-alkyne click and inverse-electron-demand Diels−Alder reactions to achieve dual functionalization of proteins in a sequential one-pot reaction. A Rho-inhibiting enzyme is functionalized with a cancer cell-targeting peptide and a fluorescent dye for successful in vitro uptake imaging and concomitant inhibition of specific Rho-mediated cellular pathways. The ease of synthesis, fast kinetics, high solubility and regioselectivity make N-alkylpyridinium reagents unique for protein/peptide modification to increase their functional diversities for medical applications.

Keywords

Site-selective dual functionalization
Peptides
Proteins
Cancer targeting

Supplementary materials

Title
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Title
1,6 Thiol Addition of Trifunctional N Alkylpyridinium for Site selective Dual Functionalization of Proteins
Description
The Supporting Information contains 69 pages, Section 1 – 12 with Figures S3.1–S11.34, Table S1. Section 1 provides further information on the materials and methods, Section 2 describes the chemical synthesis of N-alkylpyridinium derivatives, Section 3 shows the cLogP prediction of bioconjugation derivatives, Section 4 evaluates the chemoselectivity and the bioconjugation reaction kinetics and Section 5 describes the stability study of N-alkylpyridinium reagents. Section 6 contains the NMR characterization of key product 9. Section 7 describes the computational methods for the reagent design and frontier molecular orbital (FMO) analysis, the mechanism elucidation using Density functional theory (DFT) calculations. Sections 8 and 9 report the procedures used site-selective modification of peptides and proteins, respectively, as characterization of the obtained bioconjugates. Section 10 summarizes detailed in vivo experiments, including confocal microscopy, intoxication assay and Western Blot analysis.
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