An automated Calculation Pipeline for Differential Pair Interaction Energies with Molecular Force Fields using the Tinker Molecular Modeling Package

08 February 2024, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

An automated pipeline for comprehensive calculation of intermolecular interaction energies based on molecular force-fields using the Tinker molecular modelling package is presented. Starting with non-optimized chemically intuitive monomer structures, the pipeline allows the approximation of global minimum energy monomers and dimers, configuration sampling for various monomer-monomer distances, estimation of coordination numbers by molecular dynamics simulations, and the evaluation of differential pair interaction energies. The latter are used to derive Flory-Huggins parameters and isotropic particle-particle repulsions for Dissipative Particle Dynamics (DPD). The computational results for force fields MM3, MMFF94, OPLS-AA and AMOEBA09 are analyzed with Density Functional Theory (DFT) calculations and DPD simulations for a mixture of the non-ionic polyoxyethylene alkyl ether surfactant C10E4 with water to demonstrate the usefulness of the approach.

Keywords

intermolecular interaction
nonbonding interaction
molecular force field
molecular modeling
molecular dynamics
monomer
dimer
Flory-Huggins parameter
isotropic repulsion
Dissipative Particle Dynamics
DPD
non-ionic polyoxyethylene alkyl ether surfactant
C10E4

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