Benchmarking machine-readable vectors of chemical re- actions on computed activation barriers

04 September 2023, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

In recent years, there has been a surge of interest in predicting computed activation barriers, to enable the acceleration of the automated exploration of reaction networks. Consequently, various predictive approaches have emerged, ranging from graph-based models to methods based on the three-dimensional structure of reactants and products. In tandem, many representations have been developed to predict experimental targets, which may hold promise for barrier prediction as well. Here, we bring together all of these efforts and benchmark various methods (CGR, SLATMd , B2R2l , MFPs, DRFP and RXNFP) for the prediction of computed activation barriers on three diverse datasets

Keywords

benchmark
reactions
activation barriers
machine learning
representations

Supplementary materials

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Title
Supplementary Material for “Benchmarking machine-readable vectors of chemical reactions on computed activation barriers”
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Supplementary Material for “Benchmarking machine-readable vectors of chemical reactions on computed activation barriers”
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Comment number 1, Timur I. Madzhidov: Oct 03, 2023, 15:11

It is very interesting publication. But I want to stress that CGR approach was not developed by Heid and Green. They applied MPNN on CGR representation which was proposed by Varnek [https://link.springer.com/article/10.1007/s10822-005-9008-0]. The history of CGR approach is described in [https://www.russchemrev.org/RCR4746pdf]