Geometry Optimization: A Comparison of Different Open-Source Geometry Optimizers

22 August 2023, Version 4
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Based on a series of energy minimizations with starting structures obtained from the Baker test set of 30 organic molecules, a comparison is made between various open-source geometry optimization codes that are interfaced with the open-source QUantum Interaction Computational Kernel (QUICK) program for gradient and energy calculations. The findings demonstrate how the choice of the coordinate system influences the optimization process to reach an equilibrium structure. With fewer steps, internal coordinates outperform Cartesian coordinates while the choice of the initial Hessian and Hessian update method in quasi-Newton approaches made by different optimization algorithms also contributes to the rate of convergence. Furthermore, an available open-source machine learning method based on Gaussian Process Regression (GPR) was evaluated for energy minimizations over surrogate potential energy surfaces with both Cartesian and internal coordinates, with internal coordinates outperforming Cartesian. Overall, geomeTRIC and DL-FIND with their default optimization method as well as with GPR-based model using Hartree--Fock theory with the 6-31G** basis set, needed a comparable number of geometry optimization steps to the approach of Baker using a unit matrix as the initial Hessian to reach the optimized geometry. On the other hand, the Berny and Sella offerings in ASE outperformed the other algorithms. Based on this we recommend using the file-based approaches, ASE/Berny and ASE/Sella, for large-scale optimization efforts, while if using a single executable is preferable, we now distribute QUICK integrated with DL-FIND.

Keywords

QUICK
DL-Find
ASE
geomeTRIC
open-source softwares
geometry optimization
L-BFGS

Supplementary materials

Title
Description
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Title
Input Files to different Geometry Optimizers
Description
This folder contains input files for different geometry optimizers reported in the paper.
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Title
Geometry optimization with different basis sets and methods
Description
SI for comparison of optimization cycle for baker set with different level of theories with different basis sets
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