Comparative Quantum-Classical Dynamics of Natural and Synthetic Molecular Rotors Show How Vibrational Synchronization Modulates the Photoisomerization Quantum Efficiency

11 July 2023, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

We use quantum-classical trajectories to investigate the origin of the different photoisomerization quantum efficiency observed in the dim-light visual pigment Rhodopsin and in the light-driven biomimetic molecular rotor para-methoxy N-methyl indanylidene-pyrrolinium (MeO-NAIP) in methanol. The results reveal that effective light-energy conversion requires, in general, an auxiliary molecular vibration (called promoter) that does not correspond to the rotary motion but that synchronizes with it at specific times. They also reveal that Nature has designed Rhodopsin to exploit two mechanisms working in a vibrationally coherent regime. The first uses a wag promoter to ensure that ca. 75% of the absorbed photons lead to unidirectional rotations. The second mechanism ensures that the same process is fast enough to avoid directional randomization. It is found that MeO-NAIP in methanol is incapable of exploiting the above mechanisms resulting into a 50% quantum efficiency loss. However, when the solvent is removed, MeO-NAIP rotation is predicted to synchronize with a ring-inversion promoter leading to a 30% increase of quantum efficiency and, therefore, biomimetic behavior.

Keywords

Quantum-Classical Dynamics
QMMM
Molecular Rotors
Photoisomerization
Quantum Efficiency

Supplementary materials

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Description
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Title
Comparative Quantum-Classical Dynamics of Natural and Synthetic Molecular Rotors Show How Vibrational Synchronization Modulates the Photoisomerization Quantum Efficiency
Description
The supplementary material provides comprehensive computational details concerning constructing the Quantum Mechanics/Molecular Mechanics (QMMM) model, population dynamics, and the generation of corresponding initial conditions. It also offers insight into parameters for model validation and excited state lifetime estimation. Additionally, this material presents supplementary statistical analysis and discusses the harmonic model developed to support the geometric variables studied. It provides complementary discussions about the impact of the catalytic molecular environment presented in the main text.
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