Abstract
The ability to redirect electron transport to new reactions in living systems opens possibilities to store energy, generate new products, or probe physiological processes. Recent work by Huang et al. showed that 3D crystals of small tetraheme cytochromes (STC) could transport electrons over nanoscopic to mesoscopic distances by an electron hopping mechanism. Such protein-based structures with multiple localized electron carriers are promising materials for nanowires. A potential barrier to protein nanowire adoption for handling long-range electron transport is that fluctuations at room temperature may distort the nanostructure, hindering efficient electron transport. These fluctuations at the nano- and mesoscopic scales are quantified using classical molecular dynamics simulations for a small fragment of a STC nanowire and measure the effective distance distribution between electron carriers. From distance distributions, we develop a graph network representation for electron transport along nanowires with varying dimensions, and through stochastic methods determine the maximum electron flow that can be driven through these STC wires. Longer nanowires were capable of carrying fewer electrons than shorter nanowires with the same diameter, as long electron transfer distances that occasionally arise reduce the efficiency for electron transport. Thicker nanowires permit more alternative transport pathways, increasing electron transport beyond the increase in cross-section. Thus, this model implies that the design of protein-based nanowires that depend on electron hopping between charge carriers must consider control of the inherent protein flexibility, as more flexible protein-protein interfaces impose a limit on the required minimum diameter to carry currents commensurate with conventional electronics.
Supplementary materials
Title
Supporting Information for Long Range Electron Transport Rates Depend on Wire Dimensions in Cytochrome Nanowires
Description
This contains the supplementary materials, such as the detailed methods, figures, and captions for supporting animations.
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Title
Movie S1
Description
1 µs molecular dynamics simulation of the 4x6x4 nanowire fragment solvated in explicit water at
273 K
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Title
Movie S2
Description
1 µs molecular dynamics simulation of the 4x6x4 nanowire fragment solvated in explicit water at
281 K
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Title
Movie S3
Description
1 µs molecular dynamics simulation of the 4x6x4 nanowire fragment solvated in explicit water at
298 K
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Title
Movie S4
Description
1 µs molecular dynamics simulation of the 4x6x4 nanowire fragment solvated in explicit water at
309 K
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Supplementary weblinks
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Dataset S1
Description
Dataset for the simulation and analysis on Zenodo (https://doi.org/10.5281/zenodo.7864567). Contains simulation input, topology and coordinate files to rerun the simulations, as well as python and tcl scripts to do the analysis and generate the images in this manuscript.
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