Abstract
Molecular dynamics simulation has been widely used to investigate underlying mechanisms of many phenomena from the atomic scale. However, it is often difficult for conventional molecular dynamics to treat a longer time scale because they are based on Newton’s equation. Here, we propose a new molecular dynamics modelling based on a diffusive equation, that is, phase-field modelling of molecular dynamics. Our proposal successfully reproduces the dynamics of a single atom under an electric field, the repulsion of two atoms, and a molecular structure with chemical bonds. Moreover, we found that the time development by our modelling corresponds with the time-averaged one by conventional molecular dynamics. This phase-field modelling of molecules will be a powerful strategy to investigate longer time scale phenomena.
Supplementary materials
Title
Supplemental information for Phase-field modelling of molecular dynamics
Description
Gaussian fitting (Figure S1-S2), Fourier spectral method, and differentials of force field potentials
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