Abstract
We investigate 3D deep learning methods for predicting quantum mechanical energies at high-theory-level accuracy from inexpensive, rapidly computed molecular geometries. Using space-filled volumetric representations (voxels), we explore the effects of radial decay from atom centers and rotational data augmentation on learnability. We test several published computer vision models for 3D shape learning, and construct our own architecture based on 3D inception networks with physically meaningful kernels. We provide a framework for further studies and propose a modeling challenge for the computer vision and molecular machine learning communities.
Supplementary materials
Title
supplementary_information
Description
Computational details; model architectures; voxel parameter screen results; full-scale modeling results.
Actions
Supplementary weblinks
Title
associated_code
Description
Example data processing and voxelization code, model classes, and training and evaluation code. Demonstrated on a small subset (10k) of the full dataset.
Actions
View