Reproducing the invention of a named reaction: zero-shot prediction of unseen chemical reactions

23 June 2021, Version 2
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

While state-of-art models can predict reactions through the transfer learning of thousands of samples with the same reaction types as those of the reactions to predict, how to prepare such models to predict "unseen" reactions remain an unanswered question. We aim to study the Transformer model's ability to predict "unseen" reactions following "zero-shot reaction prediction (ZSRP)", a concept derived from zero-shot learning and zero-shot translation. We reproduce the human invention of the Chan-Lam coupling reaction where the inventor was inspired by the Suzuki reaction when improving Barton's bismuth arylation reaction. After being fine-tuned with the samples from these two "existing" reactions, the USPTO-trained Transformer can predict "unseen" Chan-Lam coupling reactions with 55.7% top-1 accuracy. Our model also mimics the later stage of the history of this reaction, where the initial case of this reaction was generalized to more reactants and reagents via the "one-shot/few-shot reaction prediction(OSRP/FSRP)" approaches.

Keywords

reaction prediction
zero-shot learning
One-shot learning
Transformer model

Supplementary materials

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Title
Supporting Information Reproducing the invention of a named reaction: zero-shot prediction of unseen chemical reactions
Description
Unlike the previous studies that focused on optimizing training processes to achieve improved prediction performances with regard to certain types of chemical reactions, our study focuses on the proof-of-concept of the fact that one can increase the possibility of correctly predicting unseen reactions via a ZSRP approach inspired by reproducing the human invention of a named reaction.
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