Protonation, Tautomerism, and Base Pairing of the Antiviral Favipiravir (T-705)

Favipiravir (T-705) is an antiviral medication used to treat influenza. T-705 is also currently being trialled as a repurposed COVID-19 treatment. To help accelerate these efforts, this study provides important solution-phase properties of T-705 determined via computational chemistry. Density functional theory (DFT) calculations combined with the SMD continuum solvation model demonstrate that T-705 prefers the aromatic enol form in solution over the ketone tautomer. Deprotonation constants for the conjugate acids of T-705 (pKas) are then evaluated, by combining the DFT/SMD calculations with accurate G4 gas-phase basicities. These calculations indicate that T-705 will preferentially protonate the ring nitrogen ortho to the alcohol functional group (pKa ~ 7.4), along with protonation of the oxygen on the amide side-chain at more acidic conditions (pKa ~ 9.8). No other protomers are expected to be important. Significantly, protonation of the ring nitrogen produces an acid that can deprotonate to the enol form (pKa ~ 5.1), providing a pathway for their facile interconversion. Finally, base-pairing of the active ribose-bound form of T-705 to cytidine and uridine is also examined. These calculations indicate that both base pairs have large binding free energies of around 7 – 8 kcal/mol, supporting previous findings that T-705 can bind with both nucleobases, leading to mis-incorporation of these pairs into viral RNA.